API Reference

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API Reference#

Import protdata as:

import protdata

protdata

Input/Output#

read_maxquant(file[, ...])

Load MaxQuant proteinGroups.txt into an AnnData object.

read_fragpipe(file[, ...])

Load a FragPipe protein group matrix into an AnnData object.

read_diann(file[, index_column, sep])

Load DIA-NN protein group matrix (report.pg_matrix.tsv) into an AnnData object.

read_mztab(file[, index_column])

Load mzTab protein table into an AnnData object.
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